Note - This list is dynamic, so will be updated as and when necessary, and I do not necessarily agree with everything stated in every link provided.
Defending the Qur’an
1. History of the Qur'an
2. Did the Qur'an Just Copy from Other Sources
The Historical Prophet (ص)
Dated and Datable Texts Mentioning the Prophet (ص)
Islam and Women
1. Are Women Deficient in Intelligence in Islam?
2. The Prophet’s (ص) Marriage to A’ishah (ر)
3. Two Issues Around Prophet Muhammad’s (ص) Marriage With Safiyyah (ر)
4. Refuting The Allegation That ‘Prophet Muhammed (ص) hit his wife A'isha (ر)’ and more!
A Warlord Prophet (ص)?
1. Jihad & Martyrdom, War & Peace
2. Banu Quraydhah's Punishment
3. Did Islam Spread by the Sword? [Animated Version]
4. Is Shari'ah the Most Barbaric Form of Law?
Islam and Taqiyyah
Miscellaneous Hadiths
1. Sucking the Tongues of Children?
2. A False Hadith: The Prophet Kissed the Genitals of His Little Grandson